PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G26660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1124aa    MW: 124224 Da    PI: 6.4725
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G26660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.79.5e-23119220199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  OMERI06G26660.1 119 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RD 208
                      99*****************************954.4444.49************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++l+++++r+
  OMERI06G26660.1 209 EKQQLLLGIRRA 220
                      88889****997 PP

2Auxin_resp1187.7e-39245328183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  OMERI06G26660.1 245 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 328
                      79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575135No hitNo description
SuperFamilySSF1019363.14E-43108248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-41111234IPR015300DNA-binding pseudobarrel domain
CDDcd100174.46E-19118210No hitNo description
PROSITE profilePS5086311.801119221IPR003340B3 DNA binding domain
SMARTSM010191.6E-22119221IPR003340B3 DNA binding domain
PfamPF023621.2E-20119220IPR003340B3 DNA binding domain
PfamPF065071.5E-33245328IPR010525Auxin response factor
PfamPF023091.7E-99881075IPR033389AUX/IAA domain
PROSITE profilePS5174526.9389901074IPR000270PB1 domain
SuperFamilySSF542774.32E-710021069No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1124 aa     Download sequence    Send to blast
MMKQAQQQQP PPASSAATTT AMAAAAAAAV VGSGCEGEKT KAPAINSELW HACAGPLVSL  60
PPAGSLVVYF PQGHSEQADP ETDEVYAQMT LQPVTSYGKE ALQLSELALK QARPQTEFFC  120
KTLTASDTST HGGFSVPRRA AEKIFPPLDF SMQPPAQELQ ARDLHDNVWT FRHIYRGQPK  180
RHLLTTGWSL FVSGKRLFAG DSVIFVRDEK QQLLLGIRRA NRQPTNISSS VLSSDSMHIG  240
ILAAAAHAAA NNSPFTIFYN PRASPTEFVI PFAKYQKAVY GNQISLGMRF RMMFETEELG  300
TRRYMGTITG ISDLDPVRWK NSQWRNLQVG WDESAAGERR NRVSIWEIEP VAAPFFICPP  360
PFFGAKRPRQ LDDESSEMEN LLKRAMPWLG EEICIKDPQT QNTIMPGLSL VQWMNMNMQQ  420
SSSFANTAMQ SEYLRSLSNP NMQNLGAADL SRQLCLQNQL LQQNNIQFNT PKLSQQMQPV  480
NELAKAGIPL NQLGVSTKPQ EQIHDASNLQ RQQPSMNHML PLSQAQTSLG QAQVLVQNQM  540
QQQHASSTQG QQPATSQPLL LPQQQQQQQQ QQQQQQQQQQ KLLQQQQQQL LLQQQQQLSK  600
MPAQLSSLAN QQFQLTDQQL QLQLLQKLQQ QQQSLLSQPA VTLAQLPLIQ EQQKLLLDMQ  660
QQLSNSQTLS QQQMMPQQST KVPSQNTPLP LPVQQEPQQK LLQKQAMLAD TSEAAVPPTT  720
SVNVISTTGS PLMTIGATHS VLTEEIPSCS TSPSTANGNR LLQPILGRNK HCSMINTEKV  780
PQSAAPMSVP SSLEAVTATP RMIKDSPKLN HSVKQSVVAS KLANAGTGSQ NYVNNPPPTD  840
YLETASSATS VWLSQNDGLL HQNFPMSNFN QPQMFKDAPP DAEIHAANTS NNALFGINGD  900
GPLGFPIGLG TDDFLSNGID AAKYENHIST EIDNSYRIPK DAQQEISSSM VSQSFGASDM  960
AFNSIDSTIN DGGFLNRSSW PPAAPLKRMR TFTKVYKRGA VGRSIDMSQF SGYDELKHAL  1020
ARMFSIEGQL EERQRIGWKL VYKDHEDDIL LLGDDPWEEF VGCVKCIRIL SPQEVQQMSL  1080
EGCDLGNNIP PNQACSSSDG GNAWRARCDQ NSGNPSNGSY EQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1494034946388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712960.0AB071296.1 Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643493.10.0PREDICTED: auxin response factor 19
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A0E0E6080.0A0A0E0E608_9ORYZ; Auxin response factor
STRINGORGLA06G0221800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19